PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0128449.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 238aa    MW: 27159.9 Da    PI: 10.5306
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0128449.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP147.11.2e-45331733134
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssasec....eaesssssas...nsssg 88 
                       +kdrhskihT++g+RdRR+Rls+++ +rfF Lqd+LGfdk+s+t+eWLl+qak +i +l+g  ss ++sec    ++ +++++++   +   +
  Lj0g3v0128449.1  33 RRKDRHSKIHTARGLRDRRMRLSLQVSKRFFGLQDMLGFDKPSETVEWLLNQAKSEINQLAGKgSSLTNSECegavSSLEEVVAVNgiqE---Q 123
                      69*************************************************************645555778765522233332223322...1 PP

              TCP  89 ....kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                          + a ++  + k+++++a ++ lake r++ar+rarert+ekmr+k+
  Lj0g3v0128449.1 124 gkepRPAVKSGRTIKRSRNSALHHPLAKECRERARERARERTKEKMRLKQ 173
                      3346888888899999999999*************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-4134170IPR005333Transcription factor, TCP
PROSITE profilePS5136933.3743492IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.809151168IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKKLPYSKGR KHIMGSSTEQ IQKNKSTCIL PRRRKDRHSK IHTARGLRDR RMRLSLQVSK  60
RFFGLQDMLG FDKPSETVEW LLNQAKSEIN QLAGKGSSLT NSECEGAVSS LEEVVAVNGI  120
QEQGKEPRPA VKSGRTIKRS RNSALHHPLA KECRERARER ARERTKEKMR LKQMGCWNPF  180
GTGELGSGSF QIPGVDTSFD LQLAEVKEHS SLSKENWRTV EAICYEQRVS IEDFQFSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13034PRRRK
2153165RERARERARERTK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525648.27e-44PREDICTED: transcription factor CYCLOIDEA-like
RefseqXP_006579731.17e-44PREDICTED: transcription factor CYCLOIDEA-like
SwissprotQ93WI22e-28TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBLA0A0L9TSH02e-51A0A0L9TSH0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R7532e-51A0A0S3R753_PHAAN; Uncharacterized protein
STRINGGLYMA05G07943.12e-43(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.16e-24TCP family protein